Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs2124615 | chr18:594188 | C/T | 0.000251 | 214 | 16.5 | 11.47 | 0 | KM Plot |
KIRP | rs2131921 | chr1:235705157 | C/T | 9.1E-6 | 214 | 16.43 | 16.97 | 13.03 | KM Plot |
KIRP | rs2133277 | chr15:24526247 | G/A | 7.3E-6 | 204 | 17.03 | 13.17 | 9.48 | KM Plot |
KIRP | rs2137099 | chr3:189850879 | G/A | 0.000271 | 210 | 16.43 | 19.85 | 6.42 | KM Plot |
KIRP | rs2155599 | chr21:26078136 | T/G | 0.000102 | 212 | 10.83 | 18.03 | 16.73 | KM Plot |
KIRP | rs2172252 | chr3:49678307 | A/T | 0.000366 | 213 | 13.52 | 17 | 23.63 | KM Plot |
KIRP | rs2179931 | chr14:23734393 | C/T | 1.16E-7 | 214 | 16.43 | 17.2 | 9.77 | KM Plot |
KIRP | rs2180508 | chr14:52557466 | T/G | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
KIRP | rs2183160 | chr1:89592863 | T/C | 9.32E-5 | 211 | 10 | 19.47 | 14.53 | KM Plot |
KIRP | rs2241389 | chr19:6693317 | G/A | 0.000279 | 210 | 16.53 | 13.73 | 6.53 | KM Plot |
KIRP | rs2241390 | chr19:6693240 | G/A | 0.000276 | 211 | 16.5 | 13.73 | 6.53 | KM Plot |
KIRP | rs2242255 | chr10:75597289 | T/A | 0 | 213 | 16.53 | 17.23 | 4.82 | KM Plot |
KIRP | rs2250063 | chr5:79950497 | C/T | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
KIRP | rs2254266 | chr10:75601688 | T/C | 1.65E-11 | 213 | 16.73 | 16.45 | 5.57 | KM Plot |
KIRP | rs2271907 | chr10:75011942 | G/C | 4.3E-12 | 214 | 17 | 7.27 | 5.6 | KM Plot |